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Lj0g3v0077369.2

Overview

Field	Value
Gene ID	Lj0g3v0077369
Transcript ID	Lj0g3v0077369.2
Related isoforms 2	Lj0g3v0077369.1 Lj0g3v0077369.3
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: enhancer of polycomb homolog 2-like [Glycine max] gi\|356570119\|ref\|XP_003553238.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR14898:SF5 View details on PTHR14898:SF5 Search for proteins/transripts with this domain View external data on PTHR14898:SF5	1	449	449	3.30E-204	–
PANTHER	PTHR14898 View details on PTHR14898 Search for proteins/transripts with this domain View external data on PTHR14898	1	449	449	3.30E-204	IPR024943 Show description in modal box View details on IPR024943 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF10513 View details on PF10513 Search for proteins/transripts with this domain View external data on PF10513	10	137	128	2.80E-11	IPR019542 Show description in modal box View details on IPR019542 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	245	276	32	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006357 View details of GO:0006357 AmiGO InterPro QuickGO	Biological process	Regulation of transcription by RNA polymerase II	Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.	Subterm of View details of GO:0006355 Regulates View details of GO:0006366
GO:0032777 View details of GO:0032777 AmiGO InterPro QuickGO	Cellular component	Piccolo NuA4 histone acetyltransferase complex	A heterotrimeric H4/H2A histone acetyltransferase complex with a substrate preference of chromatin over free histones. It contains a subset of the proteins found in the larger NuA4 histone acetyltransferase complex; for example, the S. cerevisiae complex contains Esa1p, Yng2p, and Epl1p.	Subterm of View details of GO:0035267
GO:0035267 View details of GO:0035267 AmiGO InterPro QuickGO	Cellular component	NuA4 histone acetyltransferase complex	A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60).	Subterm of View details of GO:0043189

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj0g3v0077369.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0077369.2, powered by CORGI.

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