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Lj0g3v0122109.1

Overview

Field Value
Gene ID Lj0g3v0122109
Transcript ID Lj0g3v0122109.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cicer arietinum] gi|502133672|ref|XP_004501850.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
87 130 44 – –
PANTHER
PTHR24012
109 311 203 3.30E-60 –
Gene3D
G3DSA:3.30.70.330
119 216 98 1.20E-29
IPR012677
SUPERFAMILY
SSF54928
128 223 96 2.15E-29
IPR012677
ProSiteProfiles
PS50102
133 211 79 19.11
IPR000504
SMART
SM00360
134 207 74 1.30E-26
IPR000504
CDD
cd12399
134 211 78 1.84E-33 –
Pfam
PF00076
135 204 70 3.10E-21
IPR000504
Gene3D
G3DSA:3.30.70.330
217 311 95 6.90E-31
IPR012677
SUPERFAMILY
SSF54928
220 311 92 1.88E-30
IPR012677
ProSiteProfiles
PS50102
229 307 79 20.338
IPR000504
CDD
cd12399
230 306 77 2.52E-35 –
SMART
SM00360
230 303 74 1.70E-29
IPR000504
Pfam
PF00076
231 301 71 1.00E-22
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj0g3v0122109.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0122109.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.