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Lj0g3v0169039.2

Overview

Field Value
Gene ID Lj0g3v0169039
Transcript ID Lj0g3v0169039.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protein argonaute 5-like [Glycine max] gi|356544686|ref|XP_003540778.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22891:SF40
31 433 403 9.40E-293 –
PANTHER
PTHR22891
31 433 403 9.40E-293 –
Gene3D
G3DSA:3.40.50.2300
43 130 88 2.00E-09 –
CDD
cd04657
63 394 332 0 –
SUPERFAMILY
SSF53098
63 395 333 3.29E-85
IPR012337
SMART
SM00950
74 395 322 1.10E-127
IPR003165
ProSiteProfiles
PS50822
74 395 322 52.034
IPR003165
Pfam
PF02171
75 394 320 6.30E-106
IPR003165
Gene3D
G3DSA:3.30.420.10
150 399 250 1.10E-19
IPR012337

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj0g3v0169039.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0169039.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.