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Lj0g3v0173989.1

Overview

Field Value
Gene ID Lj0g3v0173989
Transcript ID Lj0g3v0173989.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: CUGBP Elav-like family member 1-like [Glycine max] gi|356505495|ref|XP_003521526.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24012
1 131 131 4.40E-124 –
ProSiteProfiles
PS50102
1 75 75 13.498
IPR000504
PANTHER
PTHR24012:SF414
1 131 131 4.40E-124 –
CDD
cd12361
1 71 71 7.55E-30 –
SUPERFAMILY
SSF54928
2 85 84 4.01E-40
IPR012677
SMART
SM00360
2 71 70 1.40E-08
IPR000504
Pfam
PF00076
2 60 59 7.30E-14
IPR000504
Gene3D
G3DSA:3.30.70.330
2 86 85 3.50E-16
IPR012677
MobiDBLite
mobidb-lite
77 100 24 – –
PANTHER
PTHR24012
168 184 17 4.40E-124 –
PANTHER
PTHR24012:SF414
168 184 17 4.40E-124 –
MobiDBLite
mobidb-lite
195 237 43 – –
Gene3D
G3DSA:3.30.70.330
222 321 100 1.60E-27
IPR012677
PANTHER
PTHR24012:SF414
234 320 87 4.40E-124 –
PANTHER
PTHR24012
234 320 87 4.40E-124 –
SUPERFAMILY
SSF54928
235 318 84 4.01E-40
IPR012677
ProSiteProfiles
PS50102
238 316 79 17.541
IPR000504
SMART
SM00360
239 312 74 6.80E-25
IPR000504
CDD
cd12362
240 312 73 6.23E-46 –
Pfam
PF00076
240 310 71 1.30E-18
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj0g3v0173989.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0173989.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.