Transcript — View — Lotus Base

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Lj0g3v0218509.1

Overview

Field	Value
Gene ID	Lj0g3v0218509
Transcript ID	Lj0g3v0218509.1
Lotus japonicus genome version	MG20 v3.0
Description	RecName: Full=Uncharacterized protein At4g38062] gi\|257096919\|sp\|P0CB23.1\|Y4862_ARATH
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Coils	Coil View details on Coil Search for proteins/transripts with this domain	2	71	70	–	–
PANTHER	PTHR18937 View details on PTHR18937 Search for proteins/transripts with this domain View external data on PTHR18937	51	713	663	2.90E-158	–
PANTHER	PTHR18937:SF222 View details on PTHR18937:SF222 Search for proteins/transripts with this domain View external data on PTHR18937:SF222	51	713	663	2.90E-158	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	104	138	35	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	162	214	53	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	247	295	49	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	307	344	38	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	346	366	21	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	375	413	39	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	431	458	28	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	610	630	21	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	633	667	35	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	684	711	28	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	737	771	35	–	–
PANTHER	PTHR18937 View details on PTHR18937 Search for proteins/transripts with this domain View external data on PTHR18937	809	873	65	2.90E-158	–
PANTHER	PTHR18937:SF222 View details on PTHR18937:SF222 Search for proteins/transripts with this domain View external data on PTHR18937:SF222	809	873	65	2.90E-158	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj0g3v0218509.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0218509.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.