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Lj0g3v0225609.1

Overview

Field Value
Gene ID Lj0g3v0225609
Transcript ID Lj0g3v0225609.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: polyadenylate-binding protein 2-A-like isoform X4 [Cicer arietinum] gi|502142149|ref|XP_004504815.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 22 22 – –
Coils
Coil
14 48 35 – –
PANTHER
PTHR24012:SF436
33 50 18 5.50E-30 –
PANTHER
PTHR24012
33 50 18 5.50E-30 –
Gene3D
G3DSA:3.30.70.330
46 144 99 9.00E-24
IPR012677
MobiDBLite
mobidb-lite
46 70 25 – –
SUPERFAMILY
SSF54928
59 169 111 4.84E-26
IPR012677
PANTHER
PTHR24012
68 142 75 5.50E-30 –
PANTHER
PTHR24012:SF436
68 142 75 5.50E-30 –
ProSiteProfiles
PS50102
71 147 77 16.347
IPR000504
CDD
cd12306
72 143 72 3.92E-46 –
SMART
SM00360
72 143 72 1.70E-21
IPR000504
Pfam
PF00076
73 141 69 2.00E-16
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj0g3v0225609.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0225609.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.