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Lj0g3v0257359.2

Overview

Field Value
Gene ID Lj0g3v0257359
Transcript ID Lj0g3v0257359.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like [Cicer arietinum] gi|502153717|ref|XP_004509439.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13976
15 265 251 1.30E-118 –
SUPERFAMILY
SSF54928
50 138 89 1.75E-17
IPR012677
Gene3D
G3DSA:3.30.70.330
57 138 82 4.80E-17
IPR012677
SMART
SM00360
60 129 70 4.60E-05
IPR000504
CDD
cd12254
60 129 70 2.94E-23 –
Pfam
PF00076
62 124 63 6.10E-05
IPR000504
Gene3D
G3DSA:3.30.70.330
158 264 107 9.60E-26
IPR012677
SUPERFAMILY
SSF54928
175 262 88 2.69E-21
IPR012677
ProSiteProfiles
PS50102
176 253 78 9.849
IPR000504
SMART
SM00360
177 249 73 2.00E-09
IPR000504
CDD
cd12254
177 249 73 3.28E-29 –
Pfam
PF00076
180 246 67 9.00E-10
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj0g3v0257359.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0257359.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.