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Lj0g3v0259769.1

Overview

Field Value
Gene ID Lj0g3v0259769
Transcript ID Lj0g3v0259769.1
Lotus japonicus genome version MG20 v3.0
Description prenyltransferase/ zinc ion binding protein [Zea mays] gi|226491704|ref|NP_001152220.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10131
150 315 166 5.40E-60 –
SUPERFAMILY
SSF49599
182 234 53 6.54E-07
IPR008974
Gene3D
G3DSA:3.90.890.10
189 215 27 9.60E-05
IPR013323
Gene3D
G3DSA:3.90.890.10
216 251 36 9.10E-04
IPR013323
ProSiteProfiles
PS50145
223 270 48 12.786
IPR001293
Pfam
PF02176
223 281 59 2.90E-10
IPR001293
MobiDBLite
mobidb-lite
349 408 60 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 30

Expression data

Expression pattern

Expression pattern of Lj0g3v0259769.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0259769.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.