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Lj0g3v0282509.1

Overview

Field Value
Gene ID Lj0g3v0282509
Transcript ID Lj0g3v0282509.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: nucleolysin TIAR-like [Glycine max] gi|356565743|ref|XP_003551097.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 24 213 190 1.40E-122
PANTHER 24 213 190 1.40E-122
SUPERFAMILY 26 127 102 8.87E-23
Gene3D 46 125 80 5.30E-20
ProSiteProfiles 46 120 75 14.982
SMART 47 116 70 1.30E-16
Pfam 48 114 67 2.50E-13
CDD 48 118 71 4.02E-33
SUPERFAMILY 124 215 92 2.42E-27
Gene3D 126 211 86 6.20E-29
ProSiteProfiles 131 209 79 17.575
CDD 132 206 75 4.81E-51
SMART 132 205 74 2.00E-24
Pfam 133 203 71 5.30E-20
MobiDBLite 210 248 39
Gene3D 235 325 91 8.10E-20
SUPERFAMILY 242 329 88 6.79E-21
ProSiteProfiles 251 325 75 14.778
CDD 251 325 75 4.52E-32
SMART 252 321 70 5.30E-16
Pfam 253 319 67 2.20E-12
PANTHER 381 415 35 1.40E-122
PANTHER 381 415 35 1.40E-122

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.

Expression data

Expression pattern

Expression pattern of Lj0g3v0282509.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0282509.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.