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Lj0g3v0308159.1

Overview

Field Value
Gene ID Lj0g3v0308159
Transcript ID Lj0g3v0308159.1
Lotus japonicus genome version MG20 v3.0
Description Photosystem I reaction center subunit IV A [Medicago truncatula] gi|357510347|ref|XP_003625462.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 62 62 – –
PANTHER
PTHR34549:SF2
33 111 79 2.00E-51 –
PANTHER
PTHR34549
33 111 79 2.00E-51 –
Gene3D
G3DSA:2.30.30.50
58 111 54 4.70E-29 –
SUPERFAMILY
SSF50090
58 111 54 1.12E-23
IPR008990
Pfam
PF02427
59 111 53 8.70E-27
IPR003375
ProDom
PD004772
65 111 47 1.00E-19
IPR003375

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009522
Cellular component Photosystem I A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
Subterm of
GO:0009538
Cellular component Photosystem I reaction center A photochemical system containing P700, the chlorophyll a dimer that functions as a primary electron donor. Functioning as a light-dependent plastocyanin-ferredoxin oxidoreductase, it transfers electrons from plastocyanin to ferredoxin.
Subterm of
Part of
GO:0015979
Biological process Photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj0g3v0308159.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0308159.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.