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Lj0g3v0325339.1

Overview

Field Value
Gene ID Lj0g3v0325339
Transcript ID Lj0g3v0325339.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 32 32 – –
PANTHER
PTHR11945
10 205 196 2.40E-51 –
PANTHER
PTHR11945:SF178
10 205 196 2.40E-51 –
SMART
SM00432
14 72 59 4.40E-07
IPR002100
SUPERFAMILY
SSF55455
18 83 66 2.75E-13
IPR002100
Pfam
PF00319
22 61 40 8.20E-14
IPR002100
ProSiteProfiles
PS50066
22 70 49 14.101
IPR002100
PRINTS
PR00404
32 47 16 4.30E-05
IPR002100
PRINTS
PR00404
47 68 22 4.30E-05
IPR002100
Coils
Coil
98 129 32 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj0g3v0325339.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0325339.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.