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Lj0g3v0333209.1

Overview

Field Value
Gene ID Lj0g3v0333209
Transcript ID Lj0g3v0333209.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: polypyrimidine tract-binding protein homolog 2-like [Glycine max] gi|356509289|ref|XP_003523383.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF54928
7 101 95 1.17E-18
IPR012677
Gene3D
G3DSA:3.30.70.330
7 102 96 1.20E-22
IPR012677
PANTHER
PTHR24012:SF386
14 170 157 5.00E-38 –
PANTHER
PTHR24012
14 170 157 5.00E-38 –
CDD
cd12686
16 96 81 7.78E-58 –
ProSiteProfiles
PS50102
18 96 79 11.145
IPR000504
SMART
SM00360
19 92 74 7.60E-08
IPR000504
Pfam
PF00076
22 73 52 2.40E-07
IPR000504
SUPERFAMILY
SSF54928
112 169 58 2.61E-07
IPR012677
Gene3D
G3DSA:3.30.70.330
123 169 47 5.30E-09
IPR012677

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj0g3v0333209.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0333209.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.