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Lj1g3v0234330.1

Overview

Field Value
Gene ID Lj1g3v0234330
Transcript ID Lj1g3v0234330.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cyclin-D4-1-like [Glycine max] gi|356552951|ref|XP_003544823.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10177
1 351 351 3.10E-173 –
PANTHER
PTHR10177:SF213
1 351 351 3.10E-173 –
SUPERFAMILY
SSF47954
54 193 140 6.12E-32
IPR013763
Pfam
PF00134
64 193 130 4.70E-24
IPR006671
Gene3D
G3DSA:1.10.472.10
85 187 103 1.40E-26
IPR013763
CDD
cd00043
94 133 40 8.63E-06 –
SMART
SM00385
99 187 89 8.40E-14
IPR013763
Gene3D
G3DSA:1.10.472.10
188 291 104 8.30E-07
IPR013763
SMART
SM01332
196 321 126 1.10E-07
IPR004367
Pfam
PF02984
196 299 104 1.80E-11
IPR004367
MobiDBLite
mobidb-lite
329 353 25 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj1g3v0234330.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0234330.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.