Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v1421330.1

Overview

Field Value
Gene ID Lj1g3v1421330
Transcript ID Lj1g3v1421330.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protein MEI2-like 4-like isoform X1 [Cicer arietinum] gi|502133408|ref|XP_004501753.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24012
174 195 22 2.10E-146 –
PANTHER
PTHR24012:SF390
174 195 22 2.10E-146 –
PANTHER
PTHR24012
266 382 117 2.10E-146 –
PANTHER
PTHR24012:SF390
266 382 117 2.10E-146 –
SUPERFAMILY
SSF54928
267 425 159 1.58E-26
IPR012677
CDD
cd12524
268 343 76 4.92E-47 –
Gene3D
G3DSA:3.30.70.330
268 349 82 7.00E-18
IPR012677
ProSiteProfiles
PS50102
269 342 74 14.471
IPR000504
SMART
SM00360
270 338 69 2.40E-13
IPR000504
Pfam
PF00076
271 335 65 1.50E-11
IPR000504
ProSiteProfiles
PS50102
354 427 74 10.343
IPR000504
SMART
SM00360
355 423 69 3.60E-04
IPR000504
Gene3D
G3DSA:3.30.70.330
356 430 75 1.20E-08
IPR012677
Pfam
PF00076
356 421 66 4.70E-05
IPR000504
Gene3D
G3DSA:3.30.70.330
788 861 74 1.80E-04
IPR012677
PANTHER
PTHR24012
791 880 90 2.10E-146 –
Pfam
PF04059
791 887 97 5.90E-53
IPR007201
PANTHER
PTHR24012:SF390
791 880 90 2.10E-146 –
SMART
SM00360
793 871 79 2.6
IPR000504
SUPERFAMILY
SSF54928
793 878 86 7.66E-15
IPR012677
CDD
cd12531
794 879 86 5.25E-60 –
PANTHER
PTHR24012:SF390
899 925 27 2.10E-146 –
PANTHER
PTHR24012
899 925 27 2.10E-146 –
MobiDBLite
mobidb-lite
902 948 47 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 24

Expression data

Expression pattern

Expression pattern of Lj1g3v1421330.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1421330.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.