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Lj1g3v1548870.1

Overview

Field	Value
Gene ID	Lj1g3v1548870
Transcript ID	Lj1g3v1548870.1
Lotus japonicus genome version	MG20 v3.0
Description	Viral A-type inclusion protein repeat containing protein expressed [Medicago truncatula] gi\|357465239\|ref\|XP_003602901.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
ProSiteProfiles	PS51774 View details on PS51774 Search for proteins/transripts with this domain View external data on PS51774	1	66	66	27.903	IPR011684 Show description in modal box View details on IPR011684 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR31631:SF3 View details on PTHR31631:SF3 Search for proteins/transripts with this domain View external data on PTHR31631:SF3	6	293	288	9.40E-167	–
PANTHER	PTHR31631 View details on PTHR31631 Search for proteins/transripts with this domain View external data on PTHR31631	6	293	288	9.40E-167	–
Pfam	PF07765 View details on PF07765 Search for proteins/transripts with this domain View external data on PF07765	6	60	55	4.50E-20	IPR011684 Show description in modal box View details on IPR011684 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	52	72	21	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	88	108	21	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	163	183	21	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	257	280	24	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003779 View details of GO:0003779 AmiGO InterPro QuickGO	Molecular function	Actin binding	Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.	Subterm of View details of GO:0008092

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj1g3v1548870.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1548870.1, powered by CORGI.

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