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Lj1g3v1562490.1

Overview

Field Value
Gene ID Lj1g3v1562490
Transcript ID Lj1g3v1562490.1
Lotus japonicus genome version MG20 v3.0
Description cyclin d2 [Glycine max] gi|351726748|ref|NP_001237137.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10177
1 32 32 6.90E-176 –
PANTHER
PTHR10177:SF213
1 32 32 6.90E-176 –
PANTHER
PTHR10177
49 346 298 6.90E-176 –
PANTHER
PTHR10177:SF213
49 346 298 6.90E-176 –
SUPERFAMILY
SSF47954
57 199 143 1.24E-36
IPR013763
Pfam
PF00134
70 199 130 1.20E-28
IPR006671
Gene3D
G3DSA:1.10.472.10
86 193 108 9.80E-31
IPR013763
CDD
cd00043
100 192 93 2.41E-17 –
ProSitePatterns
PS00292
100 131 32 –
IPR006671
SMART
SM00385
105 193 89 1.70E-18
IPR013763
SUPERFAMILY
SSF47954
184 294 111 1.32E-07
IPR013763
Gene3D
G3DSA:1.10.472.10
194 300 107 1.50E-10
IPR013763
Pfam
PF02984
202 300 99 1.30E-14
IPR004367
SMART
SM01332
202 322 121 4.00E-11
IPR004367
MobiDBLite
mobidb-lite
327 347 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj1g3v1562490.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1562490.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.