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Lj1g3v1648780.2

Overview

Field Value
Gene ID Lj1g3v1648780
Transcript ID Lj1g3v1648780.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: polyadenylate-binding protein RBP47C-like [Cicer arietinum] gi|502132936|ref|XP_004501589.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24012
7 254 248 8.60E-144 –
PANTHER
PTHR24012:SF403
7 254 248 8.60E-144 –
SUPERFAMILY
SSF54928
13 124 112 3.63E-23
IPR012677
Gene3D
G3DSA:3.30.70.330
21 120 100 1.30E-22
IPR012677
CDD
cd12345
29 108 80 8.25E-47 –
ProSiteProfiles
PS50102
30 109 80 16.688
IPR000504
SMART
SM00360
31 105 75 5.00E-18
IPR000504
Pfam
PF00076
32 101 70 8.50E-15
IPR000504
MobiDBLite
mobidb-lite
106 137 32 – –
Gene3D
G3DSA:3.30.70.330
121 211 91 2.00E-26
IPR012677
SUPERFAMILY
SSF54928
125 235 111 6.18E-31
IPR012677
CDD
cd12346
134 205 72 3.74E-38 –
ProSiteProfiles
PS50102
135 207 73 18.444
IPR000504
SMART
SM00360
136 203 68 1.80E-21
IPR000504
Pfam
PF00076
137 201 65 1.30E-19
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj1g3v1648780.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1648780.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.