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Lj1g3v1786370.1

Overview

Field	Value
Gene ID	Lj1g3v1786370
Transcript ID	Lj1g3v1786370.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: protein IQ-DOMAIN 14-like [Glycine max] gi\|356506998\|ref\|XP_003522259.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR32295:SF6 View details on PTHR32295:SF6 Search for proteins/transripts with this domain View external data on PTHR32295:SF6	1	435	435	8.80E-230	–
PANTHER	PTHR32295 View details on PTHR32295 Search for proteins/transripts with this domain View external data on PTHR32295	1	435	435	8.80E-230	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	18	59	42	–	–
ProSiteProfiles	PS50096 View details on PS50096 Search for proteins/transripts with this domain View external data on PS50096	87	115	29	8.791	IPR000048 Show description in modal box View details on IPR000048 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00612 View details on PF00612 Search for proteins/transripts with this domain View external data on PF00612	89	108	20	0.0016	IPR000048 Show description in modal box View details on IPR000048 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50096 View details on PS50096 Search for proteins/transripts with this domain View external data on PS50096	111	138	28	8.133	IPR000048 Show description in modal box View details on IPR000048 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00612 View details on PF00612 Search for proteins/transripts with this domain View external data on PF00612	111	128	18	0.074	IPR000048 Show description in modal box View details on IPR000048 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	303	392	90	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	409	437	29	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005515 View details of GO:0005515 AmiGO InterPro QuickGO	Molecular function	Protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	Subterm of View details of GO:0005488

Genome browser

LORE1 insertions 108

Expression data

Expression pattern

Expression pattern of Lj1g3v1786370.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1786370.1, powered by CORGI.

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