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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1878490 |
| Transcript ID | Lj1g3v1878490.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | CGS1 mRNA stability [Medicago truncatula] gi|357466147|ref|XP_003603358.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 480 | 480 | 0 | – | |
| ProSiteProfiles | 1 | 77 | 77 | 12.03 | ||
| PANTHER | 1 | 480 | 480 | 0 | – | |
| CDD | 2 | 77 | 76 | 5.12E-05 | – | |
| SUPERFAMILY | 8 | 84 | 77 | 1.29E-13 | ||
| Pfam | 8 | 79 | 72 | 0.022 | ||
| SUPERFAMILY | 116 | 261 | 146 | 1.80E-25 | ||
| Gene3D | 117 | 259 | 143 | 1.90E-18 | ||
| ProSiteProfiles | 118 | 255 | 138 | 19.419 | ||
| CDD | 119 | 251 | 133 | 3.51E-17 | – | |
| SMART | 123 | 236 | 114 | 0.053 | ||
| Gene3D | 273 | 425 | 153 | 2.30E-26 | ||
| ProSiteProfiles | 286 | 422 | 137 | 28.317 | ||
| SUPERFAMILY | 287 | 428 | 142 | 1.96E-30 | ||
| CDD | 287 | 422 | 136 | 8.34E-27 | – | |
| SMART | 291 | 403 | 113 | 0.038 | ||
| Pfam | 318 | 424 | 107 | 5.10E-10 | ||
| Gene3D | 448 | 582 | 135 | 2.20E-18 | ||
| ProSiteProfiles | 454 | 578 | 125 | 13.794 | ||
| SUPERFAMILY | 455 | 579 | 125 | 5.72E-20 | ||
| SMART | 456 | 559 | 104 | 0.2 | ||
| CDD | 456 | 578 | 123 | 2.49E-14 | – | |
| Pfam | 467 | 574 | 108 | 0.0036 | ||
| PANTHER | 533 | 645 | 113 | 0 | – | |
| PANTHER | 533 | 645 | 113 | 0 | – | |
| PANTHER | 701 | 778 | 78 | 0 | – | |
| PANTHER | 701 | 778 | 78 | 0 | – | |
| MobiDBLite | 770 | 834 | 65 | – | – | |
| PANTHER | 825 | 862 | 38 | 0 | – | |
| PANTHER | 825 | 862 | 38 | 0 | – | |
| PANTHER | 1054 | 1198 | 145 | 0 | – | |
| PANTHER | 1054 | 1198 | 145 | 0 | – | |
| PANTHER | 1253 | 1565 | 313 | 0 | – | |
| PANTHER | 1253 | 1565 | 313 | 0 | – | |
| ProDom | 1265 | 1487 | 223 | 2.00E-06 | – | |
| Coils | 1292 | 1397 | 106 | – | – | |
| Coils | 1405 | 1446 | 42 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v1878490.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1878490.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.