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Lj1g3v2264820.1

Overview

Field Value
Gene ID Lj1g3v2264820
Transcript ID Lj1g3v2264820.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: plastocyanin, chloroplastic-like [Cicer arietinum] gi|502131189|ref|XP_004500905.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 20 20 – –
PANTHER
PTHR34192
1 167 167 2.10E-96 –
PANTHER
PTHR34192:SF2
1 167 167 2.10E-96 –
SUPERFAMILY
SSF49503
66 167 102 8.99E-27
IPR008972
CDD
cd04219
69 167 99 7.87E-51
IPR002387
TIGRFAM
TIGR02656
69 167 99 7.30E-43
IPR002387
Pfam
PF00127
70 167 98 5.20E-36
IPR000923
Gene3D
G3DSA:2.60.40.420
71 167 97 6.10E-30
IPR008972
PRINTS
PR00157
74 93 20 2.70E-33
IPR002387
PRINTS
PR00156
88 101 14 3.00E-14
IPR001235
PRINTS
PR00157
97 115 19 2.70E-33
IPR002387
PRINTS
PR00156
103 118 16 3.00E-14
IPR001235
PRINTS
PR00156
144 158 15 3.00E-14
IPR001235
PRINTS
PR00157
146 165 20 2.70E-33
IPR002387
ProSitePatterns
PS00196
146 160 15 –
IPR028871

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005507
Molecular function Copper ion binding Interacting selectively and non-covalently with copper (Cu) ions.
Subterm of
GO:0009055
Molecular function Electron transfer activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj1g3v2264820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2264820.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.