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Lj1g3v2313120.1

Overview

Field Value
Gene ID Lj1g3v2313120
Transcript ID Lj1g3v2313120.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: high mobility group B protein 1-like isoform X1 [Cicer arietinum] gi|502104077|ref|XP_004492431.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 57 57 – –
PANTHER
PTHR13711
9 146 138 7.80E-61 –
PANTHER
PTHR13711:SF187
9 146 138 7.80E-61 –
PRINTS
PR00886
15 35 21 3.10E-06 –
SUPERFAMILY
SSF47095
36 119 84 2.36E-25
IPR009071
Gene3D
G3DSA:1.10.30.10
48 122 75 1.20E-24
IPR009071
SMART
SM00398
49 120 72 1.10E-26
IPR009071
ProSiteProfiles
PS50118
50 119 70 19.234
IPR009071
Pfam
PF00505
50 119 70 1.40E-24
IPR009071
CDD
cd00084
52 115 64 2.07E-14 –
PRINTS
PR00886
84 103 20 3.10E-06 –
Coils
Coil
101 121 21 – –
PRINTS
PR00886
103 123 21 3.10E-06 –
MobiDBLite
mobidb-lite
118 147 30 – –
Coils
Coil
126 146 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj1g3v2313120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2313120.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.