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Lj1g3v3948260.1

Overview

Field Value
Gene ID Lj1g3v3948260
Transcript ID Lj1g3v3948260.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: RNA-binding protein 40-like isoform X1 [Cicer arietinum] gi|502107044|ref|XP_004493139.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR16105
1 445 445 1.40E-201 –
PANTHER
PTHR16105:SF0
1 445 445 1.40E-201 –
Gene3D
G3DSA:3.30.70.330
16 98 83 2.20E-10
IPR012677
SUPERFAMILY
SSF54928
20 106 87 4.14E-20
IPR012677
ProSiteProfiles
PS50102
22 96 75 9.814
IPR000504
SMART
SM00360
23 92 70 4.80E-05
IPR000504
Pfam
PF00076
24 89 66 4.20E-07
IPR000504
MobiDBLite
mobidb-lite
95 117 23 – –
MobiDBLite
mobidb-lite
203 262 60 – –
MobiDBLite
mobidb-lite
302 331 30 – –
Gene3D
G3DSA:3.30.70.330
352 440 89 2.40E-15
IPR012677
SUPERFAMILY
SSF54928
355 440 86 4.14E-20
IPR012677
ProSiteProfiles
PS50102
358 440 83 13.84
IPR000504
CDD
cd12239
359 438 80 1.34E-36 –
SMART
SM00360
359 436 78 9.50E-10
IPR000504
Pfam
PF00076
360 432 73 2.00E-08
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj1g3v3948260.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3948260.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.