Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v4765140.1

Overview

Field Value
Gene ID Lj1g3v4765140
Transcript ID Lj1g3v4765140.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description CONSTANS-like zinc finger protein [Medicago truncatula] gi|357511155|ref|XP_003625866.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31717:SF16
12 140 129 2.50E-145 –
PANTHER
PTHR31717
12 140 129 2.50E-145 –
SMART
SM00336
18 65 48 8.30E-14
IPR000315
ProSiteProfiles
PS50119
18 65 48 10.096
IPR000315
CDD
cd00021
21 65 45 1.02E-07 –
Pfam
PF00643
21 63 43 1.90E-05
IPR000315
ProSiteProfiles
PS50119
61 107 47 10.296
IPR000315
CDD
cd00021
65 107 43 5.75E-05 –
Pfam
PF00643
65 107 43 1.10E-06
IPR000315
SMART
SM00336
66 107 42 0.037
IPR000315
PANTHER
PTHR31717:SF16
158 362 205 2.50E-145 –
PANTHER
PTHR31717
158 362 205 2.50E-145 –
MobiDBLite
mobidb-lite
274 320 47 – –
Pfam
PF06203
319 361 43 1.50E-14
IPR010402
ProSiteProfiles
PS51017
319 361 43 14.594
IPR010402

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj1g3v4765140.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4765140.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.