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Lj2g3v0932680.1

Overview

Field Value
Gene ID Lj2g3v0932680
Transcript ID Lj2g3v0932680.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: heterogeneous nuclear ribonucleoprotein A2 homolog 2-like [Glycine max] gi|356571134|ref|XP_003553735.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24012:SF426
23 309 287 1.20E-160 –
PANTHER
PTHR24012
23 309 287 1.20E-160 –
MobiDBLite
mobidb-lite
24 43 20 – –
Gene3D
G3DSA:3.30.70.330
25 123 99 2.20E-21
IPR012677
SUPERFAMILY
SSF54928
38 123 86 2.82E-21
IPR012677
ProSiteProfiles
PS50102
45 121 77 14.761
IPR000504
SMART
SM00360
46 117 72 4.90E-19
IPR000504
Pfam
PF00076
47 114 68 7.20E-13
IPR000504
SUPERFAMILY
SSF54928
128 241 114 3.49E-28
IPR012677
Gene3D
G3DSA:3.30.70.330
128 217 90 1.10E-25
IPR012677
ProSiteProfiles
PS50102
133 211 79 18.99
IPR000504
SMART
SM00360
134 207 74 1.70E-23
IPR000504
Pfam
PF00076
135 204 70 1.10E-17
IPR000504
MobiDBLite
mobidb-lite
204 229 26 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj2g3v0932680.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0932680.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.