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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0933930 |
| Transcript ID | Lj2g3v0933930.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: zinc finger CCCH domain-containing protein 41-like [Glycine max] gi|356511690|ref|XP_003524556.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 79 | 79 | 9.80E-269 | – | |
| MobiDBLite | 1 | 79 | 79 | – | – | |
| PANTHER | 1 | 79 | 79 | 9.80E-269 | – | |
| MobiDBLite | 102 | 149 | 48 | – | – | |
| PANTHER | 105 | 390 | 286 | 9.80E-269 | – | |
| PANTHER | 105 | 390 | 286 | 9.80E-269 | – | |
| ProSiteProfiles | 226 | 254 | 29 | 12.746 | ||
| SMART | 227 | 253 | 27 | 7.60E-05 | ||
| PANTHER | 406 | 898 | 493 | 9.80E-269 | – | |
| PANTHER | 406 | 898 | 493 | 9.80E-269 | – | |
| Gene3D | 468 | 553 | 86 | 6.70E-14 | ||
| CDD | 476 | 546 | 71 | 7.79E-30 | – | |
| ProSiteProfiles | 476 | 548 | 73 | 13.294 | ||
| SUPERFAMILY | 476 | 558 | 83 | 2.81E-18 | ||
| SMART | 477 | 544 | 68 | 4.20E-13 | ||
| Pfam | 478 | 531 | 54 | 1.00E-07 | ||
| Coils | 620 | 665 | 46 | – | – | |
| MobiDBLite | 672 | 697 | 26 | – | – | |
| SUPERFAMILY | 753 | 830 | 78 | 2.81E-18 | ||
| SMART | 759 | 829 | 71 | 0.99 | ||
| Gene3D | 770 | 830 | 61 | 6.10E-06 | ||
| MobiDBLite | 837 | 915 | 79 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj2g3v0933930.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0933930.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.