Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v1373380.1

Overview

Field Value
Gene ID Lj2g3v1373380
Transcript ID Lj2g3v1373380.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cyclin-D1-1-like [Glycine max] gi|356501290|ref|XP_003519458.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10177:SF206
1 334 334 5.40E-187 –
PANTHER
PTHR10177
1 334 334 5.40E-187 –
MobiDBLite
mobidb-lite
20 46 27 – –
SUPERFAMILY
SSF47954
42 178 137 1.63E-33
IPR013763
Pfam
PF00134
52 178 127 1.50E-26
IPR006671
Gene3D
G3DSA:1.10.472.10
67 172 106 1.50E-29
IPR013763
ProSitePatterns
PS00292
79 110 32 –
IPR006671
SMART
SM00385
84 172 89 9.10E-16
IPR013763
CDD
cd00043
85 171 87 3.92E-15 –
SUPERFAMILY
SSF47954
163 276 114 3.12E-06
IPR013763
Gene3D
G3DSA:1.10.472.10
173 280 108 2.30E-08
IPR013763
SMART
SM01332
181 309 129 4.90E-12
IPR004367
Pfam
PF02984
181 283 103 2.40E-13
IPR004367

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj2g3v1373380.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1373380.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.