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Lj2g3v1471890.1

Overview

Field Value
Gene ID Lj2g3v1471890
Transcript ID Lj2g3v1471890.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine max] gi|356531425|ref|XP_003534278.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24012
64 165 102 1.70E-44 –
PANTHER
PTHR24012:SF477
64 165 102 1.70E-44 –
Gene3D
G3DSA:3.30.70.330
71 165 95 4.50E-26
IPR012677
SUPERFAMILY
SSF54928
86 261 176 1.78E-41
IPR012677
ProSiteProfiles
PS50102
86 163 78 18.41
IPR000504
SMART
SM00360
87 159 73 3.60E-26
IPR000504
Pfam
PF00076
88 156 69 1.70E-17
IPR000504
Gene3D
G3DSA:3.30.70.330
166 264 99 8.10E-19
IPR012677
PANTHER
PTHR24012:SF477
181 260 80 1.70E-44 –
PANTHER
PTHR24012
181 260 80 1.70E-44 –
ProSiteProfiles
PS50102
182 261 80 15.306
IPR000504
SMART
SM00360
183 257 75 2.40E-14
IPR000504
Pfam
PF00076
184 254 71 1.20E-11
IPR000504
MobiDBLite
mobidb-lite
263 285 23 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 35

Expression data

Expression pattern

Expression pattern of Lj2g3v1471890.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1471890.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.