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Lj2g3v1485050.1

Overview

Field Value
Gene ID Lj2g3v1485050
Transcript ID Lj2g3v1485050.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: nucleolar protein 12-like [Cicer arietinum] gi|502162475|ref|XP_004512514.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 115 115 – –
MobiDBLite
mobidb-lite
126 145 20 – –
PANTHER
PTHR24012
132 151 20 6.10E-44 –
PANTHER
PTHR24012:SF476
132 151 20 6.10E-44 –
SUPERFAMILY
SSF54928
194 301 108 1.10E-13
IPR012677
PANTHER
PTHR24012
196 232 37 6.10E-44 –
PANTHER
PTHR24012:SF476
196 232 37 6.10E-44 –
CDD
cd12394
201 291 91 8.25E-38 –
Gene3D
G3DSA:3.30.70.330
201 293 93 5.90E-17
IPR012677
ProSiteProfiles
PS50102
201 295 95 12.543
IPR000504
SMART
SM00360
202 291 90 5.00E-09
IPR000504
Pfam
PF00076
203 245 43 5.20E-06
IPR000504
PANTHER
PTHR24012:SF476
256 392 137 6.10E-44 –
PANTHER
PTHR24012
256 392 137 6.10E-44 –
Gene3D
G3DSA:3.30.70.330
305 394 90 1.60E-15
IPR012677
SUPERFAMILY
SSF54928
308 403 96 4.16E-16
IPR012677
ProSiteProfiles
PS50102
312 393 82 14.01
IPR000504
SMART
SM00360
313 389 77 3.20E-12
IPR000504
CDD
cd12395
313 389 77 3.10E-29 –
Pfam
PF00076
314 386 73 2.30E-07
IPR000504
MobiDBLite
mobidb-lite
390 520 131 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj2g3v1485050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1485050.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.