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Lj2g3v1659520.2

Overview

Field	Value
Gene ID	Lj2g3v1659520
Transcript ID	Lj2g3v1659520.2
Related isoforms 1	Lj2g3v1659520.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: bifunctional nuclease 2-like isoform X1 [Cicer arietinum] gi\|502161506\|ref\|XP_004512187.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SignalP	SignalP-TM_GRAM_POSITIVE View details on SignalP-TM_GRAM_POSITIVE Search for proteins/transripts with this domain	1	20	20	–	–
PANTHER	PTHR15160:SF6 View details on PTHR15160:SF6 Search for proteins/transripts with this domain View external data on PTHR15160:SF6	29	321	293	8.40E-124	–
PANTHER	PTHR15160 View details on PTHR15160 Search for proteins/transripts with this domain View external data on PTHR15160	29	321	293	8.40E-124	–
ProSiteProfiles	PS51658 View details on PS51658 Search for proteins/transripts with this domain View external data on PS51658	123	256	134	31.626	IPR003729 Show description in modal box View details on IPR003729 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF103256 View details on SSF103256 Search for proteins/transripts with this domain View external data on SSF103256	133	257	125	3.66E-26	IPR003729 Show description in modal box View details on IPR003729 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF02577 View details on PF02577 Search for proteins/transripts with this domain View external data on PF02577	136	254	119	3.10E-20	IPR003729 Show description in modal box View details on IPR003729 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0004518 View details of GO:0004518 AmiGO InterPro QuickGO	Molecular function	Nuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids.	Subterm of View details of GO:0016788

Genome browser

LORE1 insertions 22

Expression data

Expression pattern

Expression pattern of Lj2g3v1659520.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1659520.2, powered by CORGI.

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