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Lj2g3v1705490.1

Overview

Field Value
Gene ID Lj2g3v1705490
Transcript ID Lj2g3v1705490.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: MKI67 FHA domain-interacting nucleolar phosphoprotein-like [Glycine max] gi|356530697|ref|XP_003533917.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 26 26 – –
Gene3D
G3DSA:3.30.70.330
35 129 95 9.50E-19
IPR012677
PANTHER
PTHR24012
46 194 149 4.60E-24 –
PANTHER
PTHR24012:SF243
46 194 149 4.60E-24 –
SUPERFAMILY
SSF54928
49 195 147 1.88E-22
IPR012677
ProSiteProfiles
PS50102
50 128 79 14.641
IPR000504
CDD
cd12307
51 124 74 3.98E-40 –
SMART
SM00360
51 124 74 1.00E-16
IPR000504
Pfam
PF00076
52 116 65 5.30E-13
IPR000504
Coils
Coil
151 171 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj2g3v1705490.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1705490.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.