Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v1717640.1

Overview

Field Value
Gene ID Lj2g3v1717640
Transcript ID Lj2g3v1717640.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable salt tolerance-like protein At1g78600-like isoform 1 [Glycine max] gi|356496673|ref|XP_003517190.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00336
1 47 47 1.80E-08
IPR000315
ProSiteProfiles
PS50119
1 47 47 10.239
IPR000315
PANTHER
PTHR31832
1 182 182 4.40E-123 –
PANTHER
PTHR31832:SF5
1 182 182 4.40E-123 –
Pfam
PF00643
3 34 32 7.90E-06
IPR000315
CDD
cd00021
3 45 43 3.03E-06 –
SUPERFAMILY
SSF57845
48 88 41 7.10E-06 –
ProSiteProfiles
PS50119
51 96 46 9.442
IPR000315
SMART
SM00336
51 96 46 4.00E-12
IPR000315
Pfam
PF00643
52 92 41 5.90E-08
IPR000315
CDD
cd00021
54 93 40 9.86E-08 –
MobiDBLite
mobidb-lite
105 133 29 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj2g3v1717640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1717640.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.