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Lj2g3v1734740.1

Overview

Field	Value
Gene ID	Lj2g3v1734740
Transcript ID	Lj2g3v1734740.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: transmembrane protein 53-like [Glycine max] gi\|356496739\|ref\|XP_003517223.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR12265:SF11 View details on PTHR12265:SF11 Search for proteins/transripts with this domain View external data on PTHR12265:SF11	74	258	185	1.10E-171	–
PANTHER	PTHR12265 View details on PTHR12265 Search for proteins/transripts with this domain View external data on PTHR12265	74	258	185	1.10E-171	IPR008547 Show description in modal box View details on IPR008547 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53474 View details on SSF53474 Search for proteins/transripts with this domain View external data on SSF53474	83	233	151	6.14E-12	IPR029058 Show description in modal box View details on IPR029058 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.1820 View details on G3DSA:3.40.50.1820 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1820	110	385	276	2.10E-10	IPR029058 Show description in modal box View details on IPR029058 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF05705 View details on PF05705 Search for proteins/transripts with this domain View external data on PF05705	117	383	267	1.90E-57	IPR008547 Show description in modal box View details on IPR008547 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR12265:SF11 View details on PTHR12265:SF11 Search for proteins/transripts with this domain View external data on PTHR12265:SF11	280	391	112	1.10E-171	–
PANTHER	PTHR12265 View details on PTHR12265 Search for proteins/transripts with this domain View external data on PTHR12265	280	391	112	1.10E-171	IPR008547 Show description in modal box View details on IPR008547 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53474 View details on SSF53474 Search for proteins/transripts with this domain View external data on SSF53474	315	387	73	6.14E-12	IPR029058 Show description in modal box View details on IPR029058 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj2g3v1734740.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1734740.1, powered by CORGI.

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