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Lj2g3v1851420.2

Overview

Field Value
Gene ID Lj2g3v1851420
Transcript ID Lj2g3v1851420.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial-like [Glycine max] gi|356496878|ref|XP_003517292.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10804
54 353 300 7.00E-178 –
PANTHER
PTHR10804:SF82
54 353 300 7.00E-178 –
SUPERFAMILY
SSF55920
73 352 280 8.37E-87
IPR000994
Hamap
MF_01974
108 353 246 39.715
IPR002467
Gene3D
G3DSA:3.90.230.10
110 353 244 7.50E-102
IPR000994
TIGRFAM
TIGR00500
110 352 243 2.50E-86
IPR002467
CDD
cd01086
116 352 237 7.45E-138
IPR002467
Pfam
PF00557
117 344 228 2.10E-53
IPR000994
PRINTS
PR00599
173 186 14 2.80E-16
IPR001714
PRINTS
PR00599
195 211 17 2.80E-16
IPR001714
PRINTS
PR00599
265 277 13 2.80E-16
IPR001714
ProSitePatterns
PS00680
271 289 19 –
IPR002467

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004177
Molecular function Aminopeptidase activity Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain.
Subterm of
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of
GO:0008235
Molecular function Metalloexopeptidase activity Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj2g3v1851420.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1851420.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.