Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v3339490.1

Overview

Field Value
Gene ID Lj2g3v3339490
Transcript ID Lj2g3v3339490.1
Lotus japonicus genome version MG20 v3.0
Description Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|357495473|ref|XP_003618025.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11746:SF106
1 358 358 6.10E-198 –
PANTHER
PTHR11746
1 358 358 6.10E-198 –
PIRSF
PIRSF005739
3 357 355 5.50E-132
IPR016461
Gene3D
G3DSA:1.10.10.10
8 109 102 7.90E-35
IPR011991
SUPERFAMILY
SSF46785
14 112 99 3.99E-27
IPR011991
ProSiteProfiles
PS51683
22 357 336 73.707
IPR016461
Pfam
PF08100
32 84 53 1.60E-22
IPR012967
SUPERFAMILY
SSF53335
114 355 242 3.96E-67
IPR029063
Gene3D
G3DSA:3.40.50.150
116 355 240 4.00E-73
IPR029063
Pfam
PF00891
123 343 221 8.20E-80
IPR001077
CDD
cd02440
198 290 93 9.32E-05 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008171
Molecular function O-methyltransferase activity Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule.
Subterm of
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj2g3v3339490.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v3339490.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.