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Lj3g3v0223050.1

Overview

Field Value
Gene ID Lj3g3v0223050
Transcript ID Lj3g3v0223050.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Solute carrier family 25 (Mitochondrial carrier ornithine transporter) member [Medicago truncatula] gi|357454969|ref|XP_003597765.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24089:SF270
10 291 282 6.10E-132 –
ProSiteProfiles
PS50920
10 93 84 14.833
IPR018108
PANTHER
PTHR24089
10 291 282 6.10E-132 –
SUPERFAMILY
SSF103506
11 286 276 4.05E-71
IPR023395
Pfam
PF00153
11 96 86 5.30E-15
IPR018108
Gene3D
G3DSA:1.50.40.10
12 289 278 6.10E-74
IPR023395
PRINTS
PR00926
15 28 14 9.40E-08
IPR002067
PRINTS
PR00926
28 42 15 9.40E-08
IPR002067
ProSiteProfiles
PS50920
102 192 91 21.226
IPR018108
Pfam
PF00153
103 193 91 1.20E-21
IPR018108
PRINTS
PR00926
165 183 19 9.40E-08
IPR002067
ProSiteProfiles
PS50920
203 290 88 25.002
IPR018108
Pfam
PF00153
209 294 86 6.10E-23
IPR018108
PRINTS
PR00926
212 234 23 9.40E-08
IPR002067

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005347
Molecular function ATP transmembrane transporter activity Enables the transfer of ATP, adenosine triphosphate, from one side of a membrane to the other.
Subterm of
GO:0055085
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj3g3v0223050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0223050.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.