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Lj3g3v0339150.3

Overview

Field Value
Gene ID Lj3g3v0339150
Transcript ID Lj3g3v0339150.3
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: small G protein signaling modulator 1-like isoform X5 [Cicer arietinum] gi|502081492|ref|XP_004486879.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22957
1 78 78 2.70E-222 –
PANTHER
PTHR22957:SF211
1 78 78 2.70E-222 –
SUPERFAMILY
SSF47923
7 70 64 2.88E-42
IPR000195
Gene3D
G3DSA:1.10.8.270
23 62 40 3.90E-27 –
SMART
SM00164
28 469 442 8.50E-26
IPR000195
ProSiteProfiles
PS50086
31 444 414 31.403
IPR000195
SUPERFAMILY
SSF47923
283 404 122 2.88E-42
IPR000195
Gene3D
G3DSA:1.10.8.270
294 368 75 3.90E-27 –
Pfam
PF00566
296 442 147 8.80E-32
IPR000195
PANTHER
PTHR22957
298 448 151 2.70E-222 –
PANTHER
PTHR22957:SF211
298 448 151 2.70E-222 –
SUPERFAMILY
SSF47923
381 447 67 2.88E-26
IPR000195
MobiDBLite
mobidb-lite
472 510 39 – –
SUPERFAMILY
SSF47923
531 612 82 2.88E-26
IPR000195
PANTHER
PTHR22957
561 625 65 2.70E-222 –
PANTHER
PTHR22957:SF211
561 625 65 2.70E-222 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 25

Expression data

Expression pattern

Expression pattern of Lj3g3v0339150.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0339150.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.