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Lj3g3v0370510.3

Overview

Field Value
Gene ID Lj3g3v0370510
Transcript ID Lj3g3v0370510.3
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable transcription factor PosF21-like isoform X1 [Cicer arietinum] gi|502081560|ref|XP_004486898.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13690
1 136 136 3.50E-102 –
MobiDBLite
mobidb-lite
1 21 21 – –
PANTHER
PTHR13690:SF80
1 136 136 3.50E-102 –
SMART
SM00338
38 102 65 1.10E-15
IPR004827
ProSiteProfiles
PS50217
40 103 64 10.944
IPR004827
Gene3D
G3DSA:1.20.5.170
42 98 57 2.30E-11 –
SUPERFAMILY
SSF57959
42 94 53 1.04E-11 –
Pfam
PF00170
42 100 59 6.50E-10
IPR004827
CDD
cd14703
43 92 50 1.34E-19 –
Coils
Coil
58 127 70 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj3g3v0370510.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0370510.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.