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Lj3g3v0397090.2

Overview

Field Value
Gene ID Lj3g3v0397090
Transcript ID Lj3g3v0397090.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cyclin-T1-5-like isoform X1 [Cicer arietinum] gi|502166767|ref|XP_004513974.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.10.472.10
28 207 180 4.90E-54
IPR013763
PIRSF
PIRSF036580
31 262 232 1.20E-56
IPR015429
SUPERFAMILY
SSF47954
31 175 145 1.29E-41
IPR013763
PANTHER
PTHR10026
32 262 231 2.50E-200 –
PANTHER
PTHR10026:SF75
32 262 231 2.50E-200 –
Pfam
PF00134
33 174 142 1.40E-24
IPR006671
CDD
cd00043
59 130 72 5.42E-14 –
SMART
SM00385
65 167 103 1.20E-07
IPR013763
CDD
cd00043
174 235 62 8.99E-08 –
SUPERFAMILY
SSF47954
176 261 86 2.38E-29
IPR013763
SMART
SM00385
180 262 83 2.20E-05
IPR013763
Coils
Coil
256 262 7 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj3g3v0397090.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0397090.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.