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Lj3g3v0428800.1

Overview

Field	Value
Gene ID	Lj3g3v0428800
Transcript ID	Lj3g3v0428800.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Cicer arietinum] gi\|502096543\|ref\|XP_004490775.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Pfam	PF06246 View details on PF06246 Search for proteins/transripts with this domain View external data on PF06246	1	282	282	7.00E-90	IPR009360 Show description in modal box View details on IPR009360 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR13021 View details on PTHR13021 Search for proteins/transripts with this domain View external data on PTHR13021	2	301	300	3.10E-153	IPR009360 Show description in modal box View details on IPR009360 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF140102 View details on SSF140102 Search for proteins/transripts with this domain View external data on SSF140102	27	102	76	4.84E-31	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	71	91	21	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	234	254	21	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0000350 View details of GO:0000350 AmiGO InterPro QuickGO	Biological process	Generation of catalytic spliceosome for second transesterification step	Conformational rearrangement of the spliceosomal complex containing the RNA products from the 1st step of splicing to form the catalytic site for the second step of splicing.	Subterm of View details of GO:0022618 Part of View details of GO:0000393

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj3g3v0428800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0428800.1, powered by CORGI.

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