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Lj3g3v0527350.1

Overview

Field Value
Gene ID Lj3g3v0527350
Transcript ID Lj3g3v0527350.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ranBP2-type zinc finger protein At1g67325-like [Cicer arietinum] gi|502173569|ref|XP_004515360.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 26 26 – –
PANTHER
PTHR23111
1 244 244 7.30E-37 –
SUPERFAMILY
SSF90209
16 54 39 7.46E-09
IPR001876
Gene3D
G3DSA:4.10.1060.10
19 54 36 2.70E-14
IPR001876
Pfam
PF00641
24 55 32 6.00E-07
IPR001876
SMART
SM00547
26 52 27 4.30E-05
IPR001876
SUPERFAMILY
SSF90209
164 201 38 3.92E-09
IPR001876
Gene3D
G3DSA:4.10.1060.10
164 201 38 9.80E-15
IPR001876
Pfam
PF00641
170 200 31 4.10E-07
IPR001876
SMART
SM00547
172 198 27 1.60E-04
IPR001876
SUPERFAMILY
SSF90209
203 240 38 1.02E-06
IPR001876
Gene3D
G3DSA:4.10.1060.10
204 242 39 1.10E-10
IPR001876
Pfam
PF00641
210 232 23 9.10E-05
IPR001876
SMART
SM00547
212 238 27 0.0039
IPR001876

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj3g3v0527350.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0527350.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.