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Lj3g3v1062520.1

Overview

Field Value
Gene ID Lj3g3v1062520
Transcript ID Lj3g3v1062520.1
Lotus japonicus genome version MG20 v3.0
Description Tubby-like F-box protein [Medicago truncatula] gi|357452139|ref|XP_003596346.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
7 28 22 – –
Pfam
PF01167
7 119 113 1.60E-44
IPR000007
Gene3D
G3DSA:3.20.90.10
17 119 103 2.00E-43
IPR000007
SUPERFAMILY
SSF54518
26 126 101 1.65E-48
IPR025659
PANTHER
PTHR16517
35 126 92 7.50E-69 –
PRINTS
PR01573
36 53 18 6.80E-40
IPR000007
ProSitePatterns
PS01200
54 67 14 –
IPR018066
PRINTS
PR01573
54 70 17 6.80E-40
IPR000007
PRINTS
PR01573
83 102 20 6.80E-40
IPR000007
PRINTS
PR01573
104 126 23 6.80E-40
IPR000007
ProSitePatterns
PS01201
111 126 16 –
IPR018066

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj3g3v1062520.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1062520.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.