Transcript — View — Lotus Base

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Lj3g3v1680390.1

Overview

Field	Value
Gene ID	Lj3g3v1680390
Transcript ID	Lj3g3v1680390.1
Lotus japonicus genome version	MG20 v3.0
Description	Eukaryotic RNA polymerase II heptapeptide repeat [Medicago truncatula] gi\|87241280\|gb\|ABD33138.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	64	64	–	–
PANTHER	PTHR33836 View details on PTHR33836 Search for proteins/transripts with this domain View external data on PTHR33836	3	346	344	1.10E-81	–
PANTHER	PTHR33836:SF2 View details on PTHR33836:SF2 Search for proteins/transripts with this domain View external data on PTHR33836:SF2	3	346	344	1.10E-81	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	72	92	21	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	82	101	20	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	130	189	60	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	206	268	63	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	280	305	26	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	353	374	22	–	–
PANTHER	PTHR33836 View details on PTHR33836 Search for proteins/transripts with this domain View external data on PTHR33836	385	433	49	1.10E-81	–
PANTHER	PTHR33836:SF2 View details on PTHR33836:SF2 Search for proteins/transripts with this domain View external data on PTHR33836:SF2	385	433	49	1.10E-81	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	399	433	35	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj3g3v1680390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1680390.1, powered by CORGI.

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