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Lj3g3v1981160.1

Overview

Field Value
Gene ID Lj3g3v1981160
Transcript ID Lj3g3v1981160.1
Lotus japonicus genome version MG20 v3.0
Description Splicing factor U2af large subunit B [Medicago truncatula] gi|357470349|ref|XP_003605459.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 45 45 – –
Gene3D
G3DSA:3.30.70.330
13 113 101 1.50E-13
IPR012677
SUPERFAMILY
SSF54928
13 113 101 5.70E-14
IPR012677
PANTHER
PTHR23139:SF61
29 110 82 1.80E-54 –
PANTHER
PTHR23139
29 110 82 1.80E-54 –
CDD
cd12230
34 113 80 1.29E-34 –
ProSiteProfiles
PS50102
35 113 79 11.179
IPR000504
SMART
SM00360
36 112 77 9.40E-04
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj3g3v1981160.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1981160.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.