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Lj3g3v2042220.3

Overview

Field Value
Gene ID Lj3g3v2042220
Transcript ID Lj3g3v2042220.3
Related isoforms 3
Lotus japonicus genome version MG20 v3.0
Description RNA-binding protein with multiple splicing [Medicago truncatula] gi|357467715|ref|XP_003604142.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 34 34 – –
PANTHER
PTHR24012:SF393
16 132 117 5.30E-112 –
PANTHER
PTHR24012
16 132 117 5.30E-112 –
Gene3D
G3DSA:3.30.70.330
27 102 76 5.40E-10
IPR012677
SUPERFAMILY
SSF54928
34 125 92 1.44E-19
IPR012677
CDD
cd12420
38 111 74 2.83E-33 –
ProSiteProfiles
PS50102
38 115 78 8.603
IPR000504
SMART
SM00360
39 109 71 0.034
IPR000504
Pfam
PF00076
40 98 59 2.40E-04
IPR000504
PANTHER
PTHR24012
203 285 83 5.30E-112 –
Gene3D
G3DSA:3.30.70.330
203 276 74 2.50E-19
IPR012677
PANTHER
PTHR24012:SF393
203 285 83 5.30E-112 –
SUPERFAMILY
SSF54928
209 274 66 1.44E-19
IPR012677
CDD
cd12245
210 285 76 3.04E-40 –
ProSiteProfiles
PS50102
212 291 80 10.394
IPR000504
SMART
SM00360
213 285 73 1.50E-07
IPR000504
Pfam
PF00076
214 275 62 5.20E-10
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj3g3v2042220.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2042220.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.