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Lj3g3v2414040.1

Overview

Field Value
Gene ID Lj3g3v2414040
Transcript ID Lj3g3v2414040.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: formin-like protein 1-like [Cicer arietinum] gi|502106220|ref|XP_004492891.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 53 53 – –
PANTHER
PTHR23213
26 40 15 9.40E-298 –
PANTHER
PTHR23213:SF220
26 40 15 9.40E-298 –
PANTHER
PTHR23213:SF220
58 70 13 9.40E-298 –
PANTHER
PTHR23213
58 70 13 9.40E-298 –
PANTHER
PTHR23213:SF220
90 152 63 9.40E-298 –
PANTHER
PTHR23213
90 152 63 9.40E-298 –
MobiDBLite
mobidb-lite
102 124 23 – –
SUPERFAMILY
SSF101447
106 116 11 1.70E-98 –
SMART
SM00498
177 591 415 2.80E-140
IPR015425
ProSiteProfiles
PS51444
177 602 426 55.166
IPR015425
PANTHER
PTHR23213:SF220
180 432 253 9.40E-298 –
PANTHER
PTHR23213
180 432 253 9.40E-298 –
Pfam
PF02181
181 576 396 5.70E-119
IPR015425
SUPERFAMILY
SSF101447
190 434 245 1.70E-98 –
MobiDBLite
mobidb-lite
226 248 23 – –
PANTHER
PTHR23213
459 598 140 9.40E-298 –
PANTHER
PTHR23213:SF220
459 598 140 9.40E-298 –
SUPERFAMILY
SSF101447
461 588 128 1.70E-98 –
MobiDBLite
mobidb-lite
609 630 22 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj3g3v2414040.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2414040.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.