Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj3g3v2742940.1

Overview

Field Value
Gene ID Lj3g3v2742940
Transcript ID Lj3g3v2742940.1
Lotus japonicus genome version MG20 v3.0
Description Cyclin-D5-2 [Medicago truncatula] gi|357453607|ref|XP_003597084.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10177
1 319 319 2.70E-155 –
PANTHER
PTHR10177:SF188
1 319 319 2.70E-155
IPR031093
SUPERFAMILY
SSF47954
12 150 139 1.25E-20
IPR013763
Pfam
PF00134
19 150 132 2.40E-16
IPR006671
Gene3D
G3DSA:1.10.472.10
33 144 112 1.40E-17
IPR013763
CDD
cd00043
50 143 94 3.80E-07 –
SUPERFAMILY
SSF47954
135 278 144 9.02E-08
IPR013763
Gene3D
G3DSA:1.10.472.10
145 253 109 9.10E-08
IPR013763
SMART
SM01332
153 279 127 0.0022
IPR004367
Pfam
PF02984
153 257 105 3.40E-11
IPR004367

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of
GO:0051726
Biological process Regulation of cell cycle Any process that modulates the rate or extent of progression through the cell cycle.
Subterm of
Regulates

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj3g3v2742940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2742940.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.