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Lj3g3v2836400.1

Overview

Field Value
Gene ID Lj3g3v2836400
Transcript ID Lj3g3v2836400.1
Lotus japonicus genome version MG20 v3.0
Description Plastid transcriptionally active 15 [Theobroma cacao] gi|508776447|gb|EOY23703.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 24 24 – –
PANTHER
PTHR13068:SF32
70 481 412 7.80E-215 –
PANTHER
PTHR13068
70 481 412 7.80E-215 –
Pfam
PF02536
73 333 261 5.70E-19
IPR003690
SMART
SM00733
86 116 31 860
IPR003690
SMART
SM00733
222 253 32 0.48
IPR003690
SMART
SM00733
259 290 32 54
IPR003690
SMART
SM00733
295 326 32 1.90E-04
IPR003690
Pfam
PF02536
312 479 168 7.90E-30
IPR003690
SMART
SM00733
331 362 32 250
IPR003690
SMART
SM00733
401 432 32 0.18
IPR003690
SMART
SM00733
433 464 32 190
IPR003690

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003690
Molecular function Double-stranded DNA binding Interacting selectively and non-covalently with double-stranded DNA.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj3g3v2836400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2836400.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.