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Lj3g3v3240000.2

Overview

Field Value
Gene ID Lj3g3v3240000
Transcript ID Lj3g3v3240000.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: polyadenylate-binding protein RBP47B'-like isoform X1 [Cicer arietinum] gi|502081781|ref|XP_004486966.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF54928
6 91 86 4.75E-22
IPR012677
Gene3D
G3DSA:3.30.70.330
7 91 85 1.90E-20
IPR012677
ProSiteProfiles
PS50102
9 89 81 15.784
IPR000504
CDD
cd12344
10 86 77 2.34E-45 –
SMART
SM00360
10 85 76 3.90E-15
IPR000504
Pfam
PF00076
11 79 69 4.60E-14
IPR000504
PANTHER
PTHR24012:SF333
79 385 307 9.10E-103 –
PANTHER
PTHR24012
79 385 307 9.10E-103 –
Gene3D
G3DSA:3.30.70.330
95 182 88 1.40E-21
IPR012677
SUPERFAMILY
SSF54928
97 190 94 8.28E-23
IPR012677
CDD
cd12345
99 177 79 6.04E-50 –
ProSiteProfiles
PS50102
99 178 80 16.841
IPR000504
SMART
SM00360
100 174 75 8.60E-20
IPR000504
Pfam
PF00076
101 170 70 1.70E-15
IPR000504
SUPERFAMILY
SSF54928
203 317 115 1.88E-26
IPR012677
Gene3D
G3DSA:3.30.70.330
211 290 80 1.20E-21
IPR012677
ProSiteProfiles
PS50102
219 291 73 16.295
IPR000504
SMART
SM00360
220 287 68 4.10E-20
IPR000504
Pfam
PF00076
221 284 64 1.90E-17
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj3g3v3240000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3240000.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.