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Lj3g3v3261460.1

Overview

Field Value
Gene ID Lj3g3v3261460
Transcript ID Lj3g3v3261460.1
Lotus japonicus genome version MG20 v3.0
Description Asparagine synthetase domain-containing protein [Medicago truncatula] gi|357475055|ref|XP_003607813.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd03766
1 248 248 1.63E-57 –
PANTHER
PTHR11772:SF3
2 301 300 3.00E-137 –
PANTHER
PTHR11772
2 301 300 3.00E-137 –
Gene3D
G3DSA:3.60.20.10
28 221 194 1.40E-11
IPR029055
SUPERFAMILY
SSF56235
36 57 22 8.49E-13
IPR029055
SUPERFAMILY
SSF56235
88 215 128 8.49E-13
IPR029055
Pfam
PF13537
106 215 110 9.90E-09
IPR017932
Gene3D
G3DSA:3.40.50.620
321 459 139 5.00E-28
IPR014729
PANTHER
PTHR11772
322 459 138 3.00E-137 –
PANTHER
PTHR11772:SF3
322 459 138 3.00E-137 –
SUPERFAMILY
SSF52402
323 440 118 2.54E-09 –
CDD
cd01991
328 449 122 4.64E-13
IPR001962
Pfam
PF00733
353 410 58 1.30E-05
IPR001962

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004066
Molecular function Asparagine synthase (glutamine-hydrolyzing) activity Catalysis of the reaction: ATP + L-aspartate + L-glutamine = AMP + diphosphate + L-asparagine + L-glutamate.
Subterm of
GO:0006529
Biological process Asparagine biosynthetic process The chemical reactions and pathways resulting in the formation of asparagine, 2-amino-3-carbamoylpropanoic acid.
Subterm of

Genome browser

LORE1 insertions 24

Expression data

Expression pattern

Expression pattern of Lj3g3v3261460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3261460.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.