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Lj3g3v3513520.1

Overview

Field Value
Gene ID Lj3g3v3513520
Transcript ID Lj3g3v3513520.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description RNA-binding protein [Medicago truncatula] gi|357473911|ref|XP_003607240.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 54 54 – –
PANTHER
PTHR24012:SF243
10 29 20 2.40E-64 –
PANTHER
PTHR24012
10 29 20 2.40E-64 –
Gene3D
G3DSA:3.30.70.330
38 134 97 1.40E-26
IPR012677
SUPERFAMILY
SSF54928
48 153 106 2.96E-27
IPR012677
PANTHER
PTHR24012
52 129 78 2.40E-64 –
PANTHER
PTHR24012:SF243
52 129 78 2.40E-64 –
ProSiteProfiles
PS50102
55 131 77 17.984
IPR000504
SMART
SM00360
56 127 72 1.30E-22
IPR000504
Pfam
PF00076
57 124 68 4.70E-17
IPR000504
PANTHER
PTHR24012
154 294 141 2.40E-64 –
SUPERFAMILY
SSF54928
154 268 115 2.82E-22
IPR012677
Gene3D
G3DSA:3.30.70.330
154 249 96 4.00E-16
IPR012677
PANTHER
PTHR24012:SF243
154 294 141 2.40E-64 –
ProSiteProfiles
PS50102
155 236 82 14.948
IPR000504
SMART
SM00360
156 232 77 4.40E-13
IPR000504
Pfam
PF00076
173 229 57 2.50E-09
IPR000504
MobiDBLite
mobidb-lite
231 310 80 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj3g3v3513520.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3513520.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.